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	<title>My Weblog on Bioinformatics, Consed, Phrap, Genome science.</title>
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		<title>My Weblog on Bioinformatics, Consed, Phrap, Genome science.</title>
		<link>http://kevinl.wordpress.com</link>
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		<item>
		<title>New Job New Scope New blog</title>
		<link>http://kevinl.wordpress.com/2009/12/03/new-job-new-scope-new-blog/</link>
		<comments>http://kevinl.wordpress.com/2009/12/03/new-job-new-scope-new-blog/#comments</comments>
		<pubDate>Thu, 03 Dec 2009 01:20:43 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/2009/12/03/new-job-new-scope-new-blog/</guid>
		<description><![CDATA[Hi Guys!! I have switched jobs! still doing bioinformatics but for a service company providing next gen sequencing. Hence I think I shall move to a new blog address its here at http://kevin-gattaca.blogspot.com/ if its still relevant to you<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=72&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Hi Guys!!<br />
I have switched jobs! still doing bioinformatics but for a service company  providing next gen sequencing. Hence I think I shall move to a new blog address  its here at <a href="http://kevin-gattaca.blogspot.com/">http://kevin-gattaca.blogspot.com/</a> if its still relevant to you</p>
<br />  <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/72/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/72/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/72/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/72/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/72/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/72/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/72/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/72/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/72/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/72/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/72/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/72/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/72/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/72/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=72&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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		<slash:comments>0</slash:comments>
	
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			<media:title type="html">KevinL</media:title>
		</media:content>
	</item>
		<item>
		<title>Macify my Ubuntu</title>
		<link>http://kevinl.wordpress.com/2009/09/16/macify-my-ubuntu/</link>
		<comments>http://kevinl.wordpress.com/2009/09/16/macify-my-ubuntu/#comments</comments>
		<pubDate>Wed, 16 Sep 2009 02:39:11 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/?p=67</guid>
		<description><![CDATA[installed gnome-do and avant-window-navigator trying to figure compositing.. hmm good that metacity does compositing!<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=67&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>installed gnome-do and<a href="https://launchpad.net/awn/"> avant-window-navigator</a></p>
<p>trying to figure compositing.. hmm good that metacity does compositing!</p>
<br />  <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/67/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/67/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/67/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/67/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/67/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/67/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/67/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/67/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/67/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/67/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/67/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/67/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/67/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/67/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=67&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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		<slash:comments>0</slash:comments>
	
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			<media:title type="html">KevinL</media:title>
		</media:content>
	</item>
		<item>
		<title>Ubuntu 9.10 WM quirks</title>
		<link>http://kevinl.wordpress.com/2009/09/16/ubuntu-9-10-wm-quirks/</link>
		<comments>http://kevinl.wordpress.com/2009/09/16/ubuntu-9-10-wm-quirks/#comments</comments>
		<pubDate>Wed, 16 Sep 2009 02:17:49 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[review]]></category>
		<category><![CDATA[software]]></category>
		<category><![CDATA[tips]]></category>
		<category><![CDATA[ubuntu]]></category>
		<category><![CDATA[alt-tab]]></category>
		<category><![CDATA[alt_r]]></category>
		<category><![CDATA[bug]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/?p=64</guid>
		<description><![CDATA[The quirks of my spanking new Ubuntu install is driving me nuts.. I found solutions online that do not seem to work! 1) I have to alt-tab twice to change windows (the first just shows the popup) tried http://ubuntuforums.org/archive/index.php/t-490238.html http://ubuntuforums.org/archive/index.php/t-570357.html but it seems that using compositing or adding visual effects solves the problem! 2) Alt_R [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=64&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>The quirks of my spanking new Ubuntu install is driving me nuts..</p>
<p>I found solutions online that do not seem to work!</p>
<p>1) I have to alt-tab twice to change windows (the first just shows the popup)</p>
<p>tried</p>
<p>http://ubuntuforums.org/archive/index.php/t-490238.html</p>
<p>http://ubuntuforums.org/archive/index.php/t-570357.html</p>
<p>but it seems that using compositing or adding visual effects solves the problem!</p>
<p>2) Alt_R doesn&#8217;t work! its a special mod key but xmodmap doesn&#8217;t help!</p>
<p>Any solutions is appreciated!</p>
<br /> Tagged: alt-tab, alt_r, bug, ubuntu <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/64/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/64/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/64/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/64/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/64/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/64/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/64/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/64/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/64/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/64/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/64/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/64/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/64/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/64/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=64&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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		<slash:comments>0</slash:comments>
	
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			<media:title type="html">KevinL</media:title>
		</media:content>
	</item>
		<item>
		<title>Moving to Ubuntu 9.04</title>
		<link>http://kevinl.wordpress.com/2009/09/02/moving-to-ubuntu-9-04/</link>
		<comments>http://kevinl.wordpress.com/2009/09/02/moving-to-ubuntu-9-04/#comments</comments>
		<pubDate>Wed, 02 Sep 2009 09:39:57 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[ubuntu]]></category>
		<category><![CDATA[9.04]]></category>
		<category><![CDATA[linux]]></category>
		<category><![CDATA[opensource]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/2009/09/02/moving-to-ubuntu-9-04/</guid>
		<description><![CDATA[Finally made the move! My old version was no longer supported (read respository servers are gone!) I needed a bit of house cleaing (read I have files which i have no use for and don&#8217;t know if i shld del) so the move was needed. I wanted to use LTS (long term support) but by [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=60&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Finally made the move!</p>
<p>My old version was no longer supported (read respository servers are gone!)</p>
<p>I needed a bit of house cleaing (read I have files which i have no use for and don&#8217;t know if i shld del)</p>
<p>so the move was needed.</p>
<p>I wanted to use LTS (long term support)</p>
<p>but by a twist of fate i ended up with 9.04 amd64 no less (to make use of the 16gb ram that i got)</p>
<p>I must say the upgrade IS an upgrade. the graphics are slicker and more imptly they are faster!</p>
<p>the migration went well. So far I didn&#8217;t have to recustomize most of my settings. Just copying the profiles sorted everything.</p>
<p>but have the usual hiccups of having to reinstalling</p>
<ol>
<li>sun java 6</li>
<li>flock-browser (why can&#8217;t i just copy it over?? had to get the deb from <a href="http://www.getdeb.net/">http://www.getdeb.net/</a>)</li>
<li>gnome-vim (why doesn&#8217;t this ship with ubuntu as default?)</li>
<li>64bit flash player (hmm haven&#8217;t gotten down to this yet)</li>
</ol>
<p><strong>But I must say the advantages are </strong></p>
<ol>
<li>better support for HP network printers (yeah! no more manual setups with IP addresses)</li>
<li>Google-chrome works!</li>
<li>did I mention again that its faster and <a href="http://news.cnet.com/ubuntu-9.04-as-slick-as-windows-7-mac-os-x/">slicker</a>?</li>
</ol>
<p>after looking at gOS I might even<a href="http://blog.ibeentoubuntu.com/2009/04/getting-that-os-x-experience-on-ubuntu.html"> fiddle to get a Mac look</a> just to be the envy of my less techy frens</p>
<p>so far I haven&#8217;t met a prob like nsaunders.. <a href="http://nsaunders.wordpress.com/2009/09/01/fix-kile-for-ubuntu-9-04/">with upgraded packages but will keep a note for his method</a></p>
<div class="flockcredit" style="text-align:right;color:#CCC;font-size:x-small;">Blogged with the <a style="color:#999;font-weight:bold;" title="Flock Browser" href="http://www.flock.com/blogged-with-flock" target="_new">Flock Browser</a></div>
<br /> Tagged: 9.04, linux, opensource, ubuntu <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/60/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/60/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/60/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/60/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/60/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/60/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/60/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/60/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/60/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/60/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/60/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/60/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/60/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/60/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=60&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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			<media:title type="html">KevinL</media:title>
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	</item>
		<item>
		<title>Eisen summarises JGI user meeting</title>
		<link>http://kevinl.wordpress.com/2009/04/04/eisen-summarises-jgi-user-meeting/</link>
		<comments>http://kevinl.wordpress.com/2009/04/04/eisen-summarises-jgi-user-meeting/#comments</comments>
		<pubDate>Sat, 04 Apr 2009 20:09:56 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[next gen seq]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/?p=56</guid>
		<description><![CDATA[Wished I could have been there.. would love to c what tools are lacking for next gen seq technologies.  http://phylogenomics.blogspot.com/2009/03/lessons-learned-at-jgi-users-meeting.html Tagged: next gen seq<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=56&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Wished I could have been there.. would love to c what tools are lacking for next gen seq technologies. </p>
<p><a href="http://phylogenomics.blogspot.com/2009/03/lessons-learned-at-jgi-users-meeting.html">http://phylogenomics.blogspot.com/2009/03/lessons-learned-at-jgi-users-meeting.html</a></p>
<br /> Tagged: next gen seq <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/56/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/56/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/56/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/56/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/56/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/56/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/56/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/56/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/56/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/56/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/56/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/56/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/56/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/56/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=56&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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			<media:title type="html">KevinL</media:title>
		</media:content>
	</item>
		<item>
		<title>Using your shell</title>
		<link>http://kevinl.wordpress.com/2009/02/25/using-your-shell/</link>
		<comments>http://kevinl.wordpress.com/2009/02/25/using-your-shell/#comments</comments>
		<pubDate>Wed, 25 Feb 2009 10:06:12 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/?p=54</guid>
		<description><![CDATA[Had to use bash to run a few one off jobs or edit my bash_profile for enviroment settings.. these are useful links! http://www.linux.com/feature/155903 &#8212; Patterns and string processing in shell scripts http://www.linux.com/feature/147568 &#8212; Save time at the command line with shell aliases and functions<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=54&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Had to use bash to run a few one off jobs or edit my bash_profile for enviroment settings..</p>
<p>these are useful links!</p>
<p><a href="http://www.linux.com/feature/155903">http://www.linux.com/feature/155903</a> &#8212; Patterns and string processing in shell scripts</p>
<p><a href="http://www.linux.com/feature/147568">http://www.linux.com/feature/147568</a> &#8212; Save time at the command line with shell aliases and functions</p>
<br />  <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/54/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/54/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/54/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/54/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/54/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/54/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/54/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/54/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/54/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/54/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/54/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/54/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/54/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/54/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=54&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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		<slash:comments>0</slash:comments>
	
		<media:content url="http://0.gravatar.com/avatar/a79926d0640c189def55221a39af2c29?s=96&#38;d=identicon&#38;r=G" medium="image">
			<media:title type="html">KevinL</media:title>
		</media:content>
	</item>
		<item>
		<title>prerelease version of the Adobe® Flash® Player 10 software for Solaris and 64-bit Linux platforms.</title>
		<link>http://kevinl.wordpress.com/2008/12/18/prerelease-version-of-the-adobe%c2%ae-flash%c2%ae-player-10-software-for-solaris-and-64-bit-linux-platforms/</link>
		<comments>http://kevinl.wordpress.com/2008/12/18/prerelease-version-of-the-adobe%c2%ae-flash%c2%ae-player-10-software-for-solaris-and-64-bit-linux-platforms/#comments</comments>
		<pubDate>Thu, 18 Dec 2008 11:10:48 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[review]]></category>
		<category><![CDATA[software]]></category>
		<category><![CDATA[ubuntu]]></category>
		<category><![CDATA[64bit]]></category>
		<category><![CDATA[flash]]></category>
		<category><![CDATA[linux]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/?p=52</guid>
		<description><![CDATA[http://labs.adobe.com/downloads/flashplayer10.html Get it while its hot! will post experiences on an Ubuntu box later Tagged: 64bit, flash, linux, ubuntu<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=52&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><a href="http://labs.adobe.com/downloads/flashplayer10.html">http://labs.adobe.com/downloads/flashplayer10.html</a></p>
<p>Get it while its hot! <img src='http://s0.wp.com/wp-includes/images/smilies/icon_smile.gif' alt=':)' class='wp-smiley' /> </p>
<p>will post experiences on an Ubuntu box later</p>
<br /> Tagged: 64bit, flash, linux, ubuntu <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/52/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/52/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/52/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/52/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/52/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/52/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/52/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/52/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/52/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/52/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/52/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/52/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/52/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/52/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=52&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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		<slash:comments>0</slash:comments>
	
		<media:content url="http://0.gravatar.com/avatar/a79926d0640c189def55221a39af2c29?s=96&#38;d=identicon&#38;r=G" medium="image">
			<media:title type="html">KevinL</media:title>
		</media:content>
	</item>
		<item>
		<title>python script to inventorise your ab1 files with md5sums</title>
		<link>http://kevinl.wordpress.com/2008/11/07/python-script-to-inventorise-your-ab1-files-with-md5sums/</link>
		<comments>http://kevinl.wordpress.com/2008/11/07/python-script-to-inventorise-your-ab1-files-with-md5sums/#comments</comments>
		<pubDate>Fri, 07 Nov 2008 11:35:25 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[opensource]]></category>
		<category><![CDATA[tips]]></category>
		<category><![CDATA[ab1]]></category>
		<category><![CDATA[chromatogram]]></category>
		<category><![CDATA[inventory]]></category>
		<category><![CDATA[md5]]></category>
		<category><![CDATA[python]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/?p=50</guid>
		<description><![CDATA[The problem that needed solving this time was having a list of filenames of my ab1 files, location( directory path) and a md5sum so i know if duplicate filenames are the same file or just a result of misnaming. managed to come up with this after copying from two different scripts one that was used [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=50&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>The problem that needed solving this time was having a list of filenames of my ab1 files, location( directory path) and a md5sum so i know if duplicate filenames are the same file or just a result of misnaming.</p>
<p>managed to come up with this after copying from two different scripts</p>
<p>one that was used to make an inventory of  a directory of ogg songs and the other a python equivalent of md5sum check in linux.</p>
<p>Have fun!</p>
<pre>#!/usr/bin/python
#===============================================================================
#
#         FILE:  inventory-abi.py
#
#        USAGE:  ./inventory-abi.py
#
#  DESCRIPTION:  Lists all the files of extension .ab1 with the directory and its md5sum
#  adapated from code from http://pthree.org/2007/08/09/recursion-in-python/ and
#  used md5sum code from http://code.activestate.com/recipes/266486/
#      OPTIONS:  ---
# REQUIREMENTS:  ---
#         BUGS:  will execute md5 on directory as well
#                current method to get CWD is not OS independent
#        NOTES:  ---
#       AUTHOR:  Kevin ,
#      VERSION:  1.0
#      CREATED:  11/07/2008 07:03:16 PM SGT
#     REVISION:  ---
#===============================================================================

import dircache, os, md5
counter = 0

def sumfile(fobj):
    '''Returns an md5 hash for an object with read() method.'''
    m = md5.new()
    while True:
        d = fobj.read(8096)
        if not d:
            break
        m.update(d)
    return m.hexdigest()

def md5sum(fname):
    '''Returns an md5 hash for file fname, or stdin if fname is "-".'''
    if fname == '-':
        ret = sumfile(sys.stdin)
    else:
        try:
            f = file(fname, 'rb')
        except:
            return 'Failed to open file'
        ret = sumfile(f)
        f.close()
    return ret

def PrintFiles(indent):
    global counter
    thisDir = os.getcwd()

    for file in dircache.listdir(thisDir):
        if (file.endswith('ab1') or os.path.isdir(file)) and not file.startswith('.'):
            if file.endswith('ab1'):
                counter += 1

            currdir = os.popen("pwd") #for output of cwd currently works for linux pending upgrade to OS independent
            md5 = md5sum(file) #calls the md5sum function, md5 lib ships with Python

            ab1File.write('%s%s\t%s\t%s\n' %(indent, file, currdir.readline()[:-1], md5))

            if os.path.isdir(file):
                os.chdir(file)
                PrintFiles(indent + '  ')
                os.chdir('../')

try:
    ab1File = open('ab1files.txt', 'w')
except IOError, e:
    print "Unable to open 'ab1files.txt' for writing: ", e
else:
    PrintFiles('')
    ab1File.write('\nCurrent number of ab1 files: %d\n\n' %(counter))
    ab1File.close()</pre>
<br /> Tagged: ab1, chromatogram, inventory, md5, python <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/50/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/50/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/50/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/50/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/50/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/50/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/50/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/50/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/50/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/50/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/50/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/50/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/50/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/50/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=50&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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		<slash:comments>4</slash:comments>
	
		<media:content url="http://0.gravatar.com/avatar/a79926d0640c189def55221a39af2c29?s=96&#38;d=identicon&#38;r=G" medium="image">
			<media:title type="html">KevinL</media:title>
		</media:content>
	</item>
		<item>
		<title>What has Bettas got to do with Programming?</title>
		<link>http://kevinl.wordpress.com/2008/10/30/what-has-bettas-got-to-do-with-programming/</link>
		<comments>http://kevinl.wordpress.com/2008/10/30/what-has-bettas-got-to-do-with-programming/#comments</comments>
		<pubDate>Thu, 30 Oct 2008 10:34:18 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[review]]></category>
		<category><![CDATA[betta]]></category>
		<category><![CDATA[fish]]></category>
		<category><![CDATA[programming]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/?p=47</guid>
		<description><![CDATA[A programmer&#8217;s view of the Universe, part 1: The fish I write a column for computer programmers called &#8220;Stevey&#8217;s Blog Rants.&#8221; It&#8217;s basically a magazine column — I publish to it about once a month. The average length of my articles is about 12 pages, although they can range anywhere from 4 to 40 pages, [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=47&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<div class="post hentry uncustomized-post-template"><a name="3167740835000911553"></a></p>
<h3 class="post-title entry-title"><a href="http://steve-yegge.blogspot.com/2008/10/programmers-view-of-universe-part-1.html">A programmer&#8217;s view of the Universe, part 1:  The fish</a></h3>
<div class="post-body entry-content">I write a column for computer programmers called &#8220;Stevey&#8217;s Blog Rants.&#8221; It&#8217;s basically a magazine column — I publish to it about once a month. The average length of my articles is about 12 pages, although they can range anywhere from 4 to 40 pages, depending on how I&#8217;m feeling. But for precedent, don&#8217;t think blogs: think of Reader&#8217;s Digest. The blog format sets the wrong expectations.</div>
</div>
<div class="post-body entry-content">Kevin: thought provoking blog post!</div>
<br /> Tagged: betta, fish, programming <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/47/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/47/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/47/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/47/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/47/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/47/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/47/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/47/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/47/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/47/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/47/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/47/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/47/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/47/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=47&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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		<slash:comments>0</slash:comments>
	
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			<media:title type="html">KevinL</media:title>
		</media:content>
	</item>
		<item>
		<title>Google DevFest D3vF3st now!</title>
		<link>http://kevinl.wordpress.com/2008/10/28/google-dev-fest-now/</link>
		<comments>http://kevinl.wordpress.com/2008/10/28/google-dev-fest-now/#comments</comments>
		<pubDate>Tue, 28 Oct 2008 05:32:41 +0000</pubDate>
		<dc:creator>aboulia</dc:creator>
				<category><![CDATA[opensource]]></category>
		<category><![CDATA[D3vF3st]]></category>
		<category><![CDATA[DevFest]]></category>
		<category><![CDATA[google]]></category>

		<guid isPermaLink="false">http://kevinl.wordpress.com/?p=39</guid>
		<description><![CDATA[Lolz writing now from the Google DevFest at Singapore&#8230; hmm sadly its not packed to the brim right now.. maybe cos its just after a long weekend. oh well, am pretty excited though.. will post relevant updates if any.. check out http://code.google.com/events/apacdevfest/ my online notes as the event progresses http://docs.google.com/Doc?id=dhj8xhdw_47djn633f6 Update: There&#8217;s going to be [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=39&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Lolz writing now from the Google DevFest at Singapore&#8230; hmm sadly its not packed to the brim right now.. maybe cos its just after a long weekend. oh well, am pretty excited though.. will post relevant updates if any..</p>
<p>check out</p>
<p><a href="http://code.google.com/events/apacdevfest/">http://code.google.com/events/apacdevfest/</a></p>
<p>my online notes as the event progresses</p>
<p><a href="http://docs.google.com/Doc?id=dhj8xhdw_47djn633f6">http://docs.google.com/Doc?id=dhj8xhdw_47djn633f6</a></p>
<p>Update: There&#8217;s going to be a SE Asia OpenSocial Application Contest</p>
<p>Check out details at <a href="http://code.google.com/events/apacdevfest/contest/">http://code.google.com/events/apacdevfest/contest/</a></p>
<p>The Event website</p>
<p>http://www.e27.sg/2008/10/13/googles-1st-hackathon-in-southeast-asia-whos-coming/</p>
<br /> Tagged: D3vF3st, DevFest, google <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gocomments/kevinl.wordpress.com/39/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/comments/kevinl.wordpress.com/39/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godelicious/kevinl.wordpress.com/39/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/delicious/kevinl.wordpress.com/39/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gofacebook/kevinl.wordpress.com/39/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/facebook/kevinl.wordpress.com/39/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gotwitter/kevinl.wordpress.com/39/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/twitter/kevinl.wordpress.com/39/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/gostumble/kevinl.wordpress.com/39/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/stumble/kevinl.wordpress.com/39/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/godigg/kevinl.wordpress.com/39/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/digg/kevinl.wordpress.com/39/" /></a> <a rel="nofollow" href="http://feeds.wordpress.com/1.0/goreddit/kevinl.wordpress.com/39/"><img alt="" border="0" src="http://feeds.wordpress.com/1.0/reddit/kevinl.wordpress.com/39/" /></a> <img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=kevinl.wordpress.com&amp;blog=2057492&amp;post=39&amp;subd=kevinl&amp;ref=&amp;feed=1" width="1" height="1" />]]></content:encoded>
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		<slash:comments>0</slash:comments>
	
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			<media:title type="html">KevinL</media:title>
		</media:content>
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